LLM-based ontological extraction tools, including SPIRES
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Updated
Jun 12, 2024 - Jupyter Notebook
LLM-based ontological extraction tools, including SPIRES
Ontology for the description of human clinical features
Mondo Disease Ontology
A Tool to Annotate and Prioritize Exome Variants
Schema and generated objects for biolink data model and upper ontology
An ontology of cell types
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Ontology Access Kit: A python library and command line application for working with ontologies
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
Repository for the GA4GH phenopacket schema
Medical action ontology
LLM-driven curation assist tool (pre-alpha)
Ontology for representing scientific evidence and provenance information
Data transformation framework for LinkML data models
Modular environmental exposures ontology
Java library to map LOINC-encoded test results to Human Phenotype Ontology
A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub
source files for OBA (Ontology of Biological Attributes)
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